ISAcma1

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009932 ND Acaryochloris marina
Acaryochloris marina MBIC11017 plasmid pREB7
DNA section
IS Length : 846 bp

Ends


IR Length : 14/15

IRL : GGGTTGTGTCGCAAAAATAGGGTGTTGGCCGAAAGGCAGTGGTAAATTGA
IRR : GGGTTGTGTCGTAAATAGTGGTTCCGGGTACAACAATCCGCTCAGTTTTA

Insertion site


Left flankDirect repeatRight flankDR Length
CGCTCTACGTCACTTTAACTCTTATCCTGCTAACCAATGCTTGA0

DNA sequence

GGGTTGTGTCGCAAAAATAGGGTGTTGGCCGAAAGGCAGTGGTAAATTGAGAGACTTTGTTCCTTTTCTTTCCAGTCAATGAAAACTGCTGACCTATTCA
AATGGCGTCACTATCAATCTGAGATCATCCTGCTTAATGTCCGTTTGTATTGCCGTTATCCTCTTAGCTATAGGAATCTAGAAGAGATGATGATGGAGCG
AGGTTTAGAAGTAGATCACAGCACTATTAATCGGTGGGTTCTTCAGTACTCCCCTGAGCTGGACAAGCGCTGTCGTCGGCATCTCAAGCCTACCAATGAT
TCCTGGAGAGTTGACGAAACTTACGTCAAAATCCGCAAAAAGTGGCGCTACCTTTATCGAGCAGTTGACTCTGACGGCTATACCCTGGACTTCTTACTCA
CAGCAAAGCGAGATACCAAGGCTGCAAAACGATTTCTGACTAAAGCATTGAATGCAGTTCATACCCATGAACCTCGGGTGATCAATGTGGACAAAAATCC
AGCGTATCCCCCTGCTGTGGAGCAGTTACAGGAAGAGGAACGTATCCCTGAAGGCGAAACAGTACGGCAGGTCAAATACCTCAACAATATAGTGGAGCAG
GATCATCGAGGGATAAAACGTCTGGTGAATCCTGGCATGAGTTTTGGATCGTTCAATTCTGCCAGAAGAACTTTGAAAGGGTATGAAGCGATGAACATGA
TCCGTAAAGGTCAGATCAACAATGTGGGTAAGGATGATGTAATGGGACAGATCTCTTTCATCAATCAAATCTTCGGACTAGCAGCATAGTCTTTGATAAA
ACTGAGCGGATTGTTGTACCCGGAACCACTATTTACGACACAACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
711 bp236 aa79789+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKTADLFKWRHYQSEIILLNVRLYCRYPLSYRNLEEMMMERGLEVDHSTINRWVLQYSPELDKRCRRHLKPTNDSWRVDETYVKIRKKWRYLYRAVDSDG
YTLDFLLTAKRDTKAAKRFLTKALNAVHTHEPRVINVDKNPAYPPAVEQLQEEERIPEGETVRQVKYLNNIVEQDHRGIKRLVNPGMSFGSFNSARRTLK
GYEAMNMIRKGQINNVGKDDVMGQISFINQIFGLAA

 

Blast result :
Comments
ISAcma1 is 72% AA similar to IS240C.
References
1] Touchman,J. (2007) Direct submission GenBank.
2] ISfinder annotation (2008).