ISAcma10

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009925 ND Acaryochloris marina
Acaryochloris marina MBIC11017 plasmid pREB6
Acaryochloris marina MBIC11017 plasmid pREB8
Acaryochloris marina MBIC11017 plasmid pREB5
Acaryochloris marina MBIC11017 plasmid pREB2
Acaryochloris marina MBIC11017
Acaryochloris marina MBIC11017 plasmid pREB1
DNA section
IS Length : 1385 bp

Ends


IR Length : 25/26

IRL : GGCTCTCTGGGAATTAGCGTGTAGCAGTCCTACATTTAGTGTGTTTCCTT
IRR : GGCTCTCCGGGAATTAGCGTGGTAGCCGCTAGATATAGTGTTTAGGTCAC

Insertion site


Left flankDirect repeatRight flankDR Length
ACATTACACTGGAATAGTGCTGCAATTTTCTCTACATACATCCCCTGATGAC8
GCAAAGTTATATCCAGCAGTCATTAATCTTTCAGCTTCGCTTGGTAGCGTTG8
CTTTGTGATTTAATACCGCAGTGAAAAAAAGTAGCGATCCCAAAAGCTCGGT8
CATCTGAAGCTATGGGTACTAAACCTTTCCAGTCCCACACGAGCAAAAGTAT8
CTTACTATTAGGCAGTCTGTTAATATTTTTCCTCATTTGGTTTTGGGGACTA8
CATTCGTGAAATTTGCATTCTTTAAGTTTGCCTCCAAAAAACTAGTAGCTTG8
GATTTGCCCATTTACCCAGTGGTAATTTTTTCTTATGACAGCCCCCAAAAG8

DNA sequence

GGCTCTCTGGGAATTAGCGTGTAGCAGTCCTACATTTAGTGTGTTTCCTTTTTCATCCCTATGGAATGATCTGAGGTAGTACTTCAGAGCAATGGCGTAA
TGGATAACTCAATTCGCATCCCGCTCAACCTTCCTGATATTCGAGTTCTAGAGCTATCGAAGACTGAGAGAGGGGATTGGCTCATCAAGATTGAGAGTAC
GCTTCAAGGAACAACCTGTCATCAATGCGGACGTGAGATTACTGACCTCCATTGTCATGATCAGCCTTTTCGGATTCGTCACCTGCCATTATTTGAAGTC
CCCGTTTACTTAGAAATTCGGCCCAAGCGTTATCGATGCAAGTATTGCGATGACCATCCCACAACAACTCAACATTTAGAATGGCACGAACCTCGCAGTC
CCAATACAAAAGCATATGAGCGTTGGCTTCTGCGAATCTTGATCAATTCAACGGTCTCAGATGTTGCCAGAAAACTAGGCGTTAGTGAGGATATCGTCAG
TGGAATCATTGATCGTTGGATTGCCGCTCAAGTTGACTGGAGCGAATATGCAGACCTCAAAGTTATGGGGATGGATGAGATTTCTCTCAAACGAGGCCAT
CGTGATTTTGTGGTTTTGATCACGATTCCTACGACGGATGGGGTGGATATATTGGCAGTTCTAGCCGACCGTAAACAGCAGACAGTGGCAAATTTCCTTC
AATCGATTCCCATTGATTTACGCCAAACCATTGAGCGCGTCTGTACGGACATGTACCAAGGATTTGTCAGTGCAGTCCGAGAACAATTGCCGCAAGCCAA
AATTGTCATTGACCGCTTTCATGTGACCAAAGCCTATCGTAATTGTGCTGATACGGTTCGTAAACGTGAGGTCAAACGTCTACGACGAGAGCTCTCTAAG
CAAGAGTATGACAGCATCAAAGGCGCGATGTGGCCTTTTAGAAAACGACCAGAGAATCTGAAAGAGTCAGAGCAACAACTCCTTGAGCGATTGTTTGCTT
ATTCTCCACAACTGAAACAGGCGTACAACCTCCGAGAGAAACTCACGCAGATATTTGAGGGCAGGTACACCAAGCACGGAGCTAAATGTGCCATCCGTGC
TTGGTGTAAACAAGTACTCAAGAGTGACATCAAGGAATTCGATTGTTTTCTGACCACTATCAATAATTGGATGGACGAGATGACCAACTATTTCCTGGAG
GGGTGGACCAGTGGTTTTGTGGAAGGATTTAATAACCGAGTCAAAGTCTTAAAAAGACGATGCTACGGTATTTTCGATATTGAAAGACTCTTCCAAAGGA
TTTCTCTTGACCTCAATGGGTATCAGACATTCGCTGTGACCTAAACACTATATCTAGCGGCTACCACGCTAATTCCCGGAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1245 bp414 aa1001344+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MDNSIRIPLNLPDIRVLELSKTERGDWLIKIESTLQGTTCHQCGREITDLHCHDQPFRIRHLPLFEVPVYLEIRPKRYRCKYCDDHPTTTQHLEWHEPRS
PNTKAYERWLLRILINSTVSDVARKLGVSEDIVSGIIDRWIAAQVDWSEYADLKVMGMDEISLKRGHRDFVVLITIPTTDGVDILAVLADRKQQTVANFL
QSIPIDLRQTIERVCTDMYQGFVSAVREQLPQAKIVIDRFHVTKAYRNCADTVRKREVKRLRRELSKQEYDSIKGAMWPFRKRPENLKESEQQLLERLFA
YSPQLKQAYNLREKLTQIFEGRYTKHGAKCAIRAWCKQVLKSDIKEFDCFLTTINNWMDEMTNYFLEGWTSGFVEGFNNRVKVLKRRCYGIFDIERLFQR
ISLDLNGYQTFAVT

 

Blast result :
Comments
ISAcma10 is 46% aa similar to ISArch12.
References
1] Swingley,W.D., Chen,M., Cheung,P.C., Conrad,A.L., Dejesa,L.C.,Hao,J., Honchak,B.M., Karbach,L.E., Kurdoglu,A., Lahiri,S.,Mastrian,S.D., Miyashita,H., Page,L., Ramakrishna,P., Satoh,S., Sattley,W.M., Shimada,Y., Taylor,H.L., Tomo,T., Tsuchiya,T., Wang,Z.T., Raymond,J., Mimuro,M., Blankenship,R.E. and Touchman,J.W. (2008) Proc. Natl. Acad. Sci. U.S.A.
2] ISfinder annotation (2009)