ISAar11

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Arthrobacter arilaitensis
Arthrobacter arilaitensis RE117
DNA section
IS Length : 1737 bp

Ends


IR Length : 10/15

IRL : CCCGGTGGTTTCATGGCAGGCGCGTCATTAACAGTCATTAAAACGAAAAA
IRR : CCCAAATTTTTCATGTGGCCGCTGACGGCCACCGGAATCCAGTACCAAAG

Insertion site


Left flankDirect repeatRight flankDR Length
AATCGCATGCCTAACGCACTCTCT4

DNA sequence

CCCGGTGGTTTCATGGCAGGCGCGTCATTAACAGTCATTAAAACGAAAAAGTGATCCGGACTTGGGATAATAGGAGTGTCGAGCTTCTATTCCACCGAAA
TCAAGGATCACCTTTTCAGTGAACCATTCTACCCGAGTTTTCCCTGCCCTCCCGACCCAACTCACCAGCCAAGCCCTGGTCTCCCACGCTGGCCTGTCGG
TGCTCAGCAACTTCCTGAACGCACTGGACTTCCAACGGGTCTGCGAAGACCGTTTCTCCCAGTTCGCGCCAGCCACCGCAGCCCACCGGCCAGGAAGAAT
CCTCGGAGCACTGGCGCTCTCGTTGGCCGCCGGCGGCGAACAAGCCACTGACATCGACCAGCTTCGAGCTGCGCCGGACCTCTTCGGCCCAGTGGCGTCC
GATGCCACGGTCAGCAGGTTCATGCACCGGATCAAGGAGCAACCAGAAGCCTTCTCCTACGGGTTCGCCACCATGACCCGGACCCTGCGTTCCAAAGCCT
GGACGGCAGCCGGACCACGCAACCCTGCCCGGCAGGCCACAGCGAACAACCCTCTGATCATCGACATCGATGCCTCCTTAGTGCACGTGCATTCCGACAA
GGAACACAGTGCTGGCACGTATAAAGGCGGGTACGGTTTCTCACCGATGATCGCCATGGCTGACTACGGCAAACCCAACGGCACCGGAGAAGTCCTCGCG
GTGCACCTGCGCCCGGGAAACCGCGGCGCGAATTCAGCGGCCTCGCATATCGAAGTGCTCACCCAGGCCTTGGCCCAGCTGCCGGATGATTTCTATGACG
AACACGGGAACCTCATAGGCGAGAAGATCCTGGTCCGCACCGATAGCGCCGGCTCCTCCCGCGAGTTCCTGCACCACCTGGACTCGCTGAGGATCCAGTT
CTCCACCTCGTATTCGCTGCCGGTCATCAAGGAACGGTTCATCCGGTGGATCGATGAGAAGAAGTTCTGGGAACCAGCCCTGGACGCTGACGGTGTCCAA
CGTGATAACGCGTGGGTGATCGACGCGAGCAAGGTGATAGAGCTGAAGGACTACCCGCCCGGGACAAGAATCTATTTGCGGGCCGAGCCCTTGCATCCCG
GGGCGAAAGCGAACTTGTTCGATACTGACGGGAACCGTGTCACGGCGTTCTTGACCAATAGCCCGCGGTTCAACGTGGCATTCCTCGATGCCCGGCATCG
GGCGCGGGGCCGGTGCGAGAACAGGATCAAGACGTTGAAGAATGCGGGGCTGGGCAAGCTGCCGTATTGGTCTTTTGCCGCGAATCAGGCGTGGGCTGAC
TTGGCAATGCTCGCACTGAATTTGGTGTCGTGGCTTCAACTTGCTGCGCTGCCTGGTGGCCATGAGGCAGGCTGCTGGGATATGAAGCGGTGGCGGTACC
GGCTATTTTCAATGGCCGGGAAAGTCGTCACCGGCGGTCGGCAGCGCCGGCTGCTGATCCATGAAAGTGCACCAGAAGCGCAACTGCTATTCCTGCTTCA
ACAGAGTATTGGCTTGCTGTTCCATCGGTGGCGGCACGGCGAGTTGGCTGCCTGAACTGGTGGTTGCCCTGTTGCTTCTTTAGTTTTGAAAGGTCATTTC
AGTCCAGGTCGGTGGAGCCTGGCACCCTGCGCTGGTGGTTCAGGCGCTTTTTGTCGTGGGTGGAATCGACGACGGCCACCGGGAATCCTTTGGTACTGGA
TTCCGGTGGCCGTCAGCGGCCACATGAAAAATTTGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1437 bp478 aa1191555+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNHSTRVFPALPTQLTSQALVSHAGLSVLSNFLNALDFQRVCEDRFSQFAPATAAHRPGRILGALALSLAAGGEQATDIDQLRAAPDLFGPVASDATVSR
FMHRIKEQPEAFSYGFATMTRTLRSKAWTAAGPRNPARQATANNPLIIDIDASLVHVHSDKEHSAGTYKGGYGFSPMIAMADYGKPNGTGEVLAVHLRPG
NRGANSAASHIEVLTQALAQLPDDFYDEHGNLIGEKILVRTDSAGSSREFLHHLDSLRIQFSTSYSLPVIKERFIRWIDEKKFWEPALDADGVQRDNAWV
IDASKVIELKDYPPGTRIYLRAEPLHPGAKANLFDTDGNRVTAFLTNSPRFNVAFLDARHRARGRCENRIKTLKNAGLGKLPYWSFAANQAWADLAMLAL
NLVSWLQLAALPGGHEAGCWDMKRWRYRLFSMAGKVVTGGRQRRLLIHESAPEAQLLFLLQQSIGLLFHRWRHGELAA

 

Blast result :
Comments
ISAar11 is 93% aa similar to ISAar8.
References
1] ISfinder annotation (2009).