ISAar38

  • Family IS5
  • Group IS427
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Arthrobacter arilaitensis
Arthrobacter arilaitensis RE117
Arthrobacter arilaitensis plasmid pRE117
DNA section
IS Length : 1010 bp

Ends


IR Length : 21/25

IRL : GAGATCGCGCCAATAGGTGTGCAACATCCGCAGTAAGTATTAATGACAGC
IRR : GAGATCGCGCCAATAGGGGACAAACGATTCTTAAGGCTTTCGATTAGGCC

Insertion site


Left flankDirect repeatRight flankDR Length
GCGTCACTAATTAGACGCTG0
AGTTAGAGGCTTAGACGCTGCTC3

DNA sequence

GAGATCGCGCCAATAGGTGTGCAACATCCGCAGTAAGTATTAATGACAGCGTAATTAACCACGTCAGGCACGTCATTAAGCAGTGAAGCAGGCACGGACA
GTGTTAAACAAGGTTTGTCTAGAACCGTTTACACAAGAAGGTCACGTGCCTGCCCTACCATCTTCCATCATCGAGCCTCTCTGGCGCCAATTCGAAGCGT
TGATCCCAGATCGGAACGTAACCCATCCACTGGGCTGCCACAAGCCACGGATCAGCGACCGGATCATCTTCGACAAGTTCATCCAAGTCCTCGTCCTGGG
CGCTGCCTATGAGAAAATCAGCGACACGACCTGCTCGGCCACCACCATCCGACGGCGCCGCGACGAATGGATCACCGCAGGGATCTTCCGCGAACTGGAG
CAGATCTGCCTGGAATCCTACGACCGGATCATTGGACTGGACCTAGAGAATCTCGTCATCGACGGATGTCTGGTCAAAGCGCCGTGCGGCGGTGAAGCCG
CCGGAAAATCCCCGGTAGACCGCGGCAAGCAAGGCACCAAACGCTCGCTGATGACCGACGGGAAAGGCATCCCGGTCGGCTGCATCACCGCAGGCGCGAA
CCGGCACGATTCCCCGTTGCTACGCCCCACGCTCGAACGCCTTTCCCGTTTCGGCTACCAGCTGCCAGAGCAGATTACCGTGCATCTGGATGCTGGATAT
GACAGCCGTAAAACACGGGAGCTGCTTACCGAGCTGGGTTGTGATTGGGAGATCAGTACCAAGGGCGAACCCTTGCAGGCCGGGGTCCGCTGGGTGGTGG
AACGAAACCAATTCGTGGCACAACCGGGGGTTCAAGAAATTGGCGATCTGCACCGAGCGCAAGGTCCGGGTCATTGACGCGTTGATCAGCCTCGCGAACA
GTGTCATCGTGATCCGCAGGCTGATCGGGGAAGCGTGGGCGACCCATCGGTGGGATACGAGGCCTAATCGAAAGCCTTAAGAATCGTTTGTCCCCTATTG
GCGCGATCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
732 bp243 aa146877+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

VPALPSSIIEPLWRQFEALIPDRNVTHPLGCHKPRISDRIIFDKFIQVLVLGAAYEKISDTTCSATTIRRRRDEWITAGIFRELEQICLESYDRIIGLDL
ENLVIDGCLVKAPCGGEAAGKSPVDRGKQGTKRSLMTDGKGIPVGCITAGANRHDSPLLRPTLERLSRFGYQLPEQITVHLDAGYDSRKTRELLTELGCD
WEISTKGEPLQAGVRWVVERNQFVAQPGVQEIGDLHRAQGPGH

 

Blast result :
Comments
ISAar38 is 54% aa similar to ISAzo38.
References
1] ISfinder annotation (2009).