ISfinder Mirror Site

ISAcar1

Family ISNCY
Group

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NC_014378	ND	Acetohalobium arabaticum	Acetohalobium arabaticum DSM 5501

DNA section

IS Length : 1131 bp

Ends

IR Length : 13

IRL : GGTTGTTGAATAAAAAATATTTCCAATTCAAAAAGGAAAAGTTGCTCACT
IRR : GGTTGTTGAATAATTAGTTTAATAAGTTGCTTAATTAGCAATTAGATTTA

Insertion site

Left flank	Direct repeat	Right flank	DR Length
TATTAGATGG	TA	AATATAATCT	2

DNA sequence

GGTTGTTGAATAAAAAATATTTCCAATTCAAAAAGGAAAAGTTGCTCACTTTCTAGTATTACTTCAGGTGACCAAACCTAAATCACTAGAAAGGAGCAAC
TACTAATGATTATATCACCTGAAGAATTAAAAGAAAATACCTTTTATCAAATTTGTTCCAAATTAGATGAGATTTATTATACAAAGTTTTCTCCTCAAGA
GAATCAAGGTCGTGGTAGACCTAAAAAATATTCAGATTTACAAATGATTAAATGTCTATTATACAAAGTTAAAAATAAAATTTATTGTTTGCGAGAACTA
GAGTCTAAGCTTAAGGAAGATCTTTTAGCTCTGGGAATCATTAAACTTAATGACGTTCCAGACCATTCTACTTTTGCTCTTAGATTTAATCAGCTTGAAA
AGATGAAATTTAATATACTTTTTCAGTCAGTGATTAAAGAATTAAATCCTGATACTAGAATTACATCTATTGATGCAACTGCTTTAAGAAGTTCAAAGAA
TGATTCAGATGCTAAATTAGGTGTATCAACTAATTTAGGTAGATATAAAGGATATAAATTACATTTAATAGCTTCAAATGACTCTATTCCACTATCATTT
AAGTTTACCACAGGAAATGTCTATGATAACACTTTTGATTACTGTAAAGAAATTATGGAACCGTTAGGTGAACATGATATTTTCATTCTTTTAGGTGATG
CAGCCTATGATAGTACTAAATTGTTCAAATTAGCAGATGATCTAGGTTTTAAGTTATTGACCGATATAAATTATAGAAATGCAGATTCTATTGATGATTT
TACTGATAAATGTAGAATAGAAAATGGAATCTATTTTAACTCTCCAATGGGAGAAAAAATGTACAAAAATAGATTAACGATAGAAAGATCATTTTCAATT
TTAAAAGAACGATATAACTTAGAAGCTCCTAGACTATATGGCTTTAAAAGATATAGATCTCATGTTATGTGGACACTCTTACTGTATTTAATTGAAAAAT
TGATCGACAAAGAAAATGGAATAACAGATAATAAATTTTCTTGGAATAGATAAATTTTGATAGTAATTAGAAATCAAATTTTAAATCTAATTGCTAATTA
AGCAACTTATTAAACTAATTATTCAACAACC

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
948 bp	315 aa	106	1053	+	No

ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MIISPEELKENTFYQICSKLDEIYYTKFSPQENQGRGRPKKYSDLQMIKCLLYKVKNKIYCLRELESKLKEDLLALGIIKLNDVPDHSTFALRFNQLEKM
KFNILFQSVIKELNPDTRITSIDATALRSSKNDSDAKLGVSTNLGRYKGYKLHLIASNDSIPLSFKFTTGNVYDNTFDYCKEIMEPLGEHDIFILLGDAA
YDSTKLFKLADDLGFKLLTDINYRNADSIDDFTDKCRIENGIYFNSPMGEKMYKNRLTIERSFSILKERYNLEAPRLYGFKRYRSHVMWTLLLYLIEKLI
DKENGITDNKFSWNR

Blast result :

Comments

ISAcar1 is 60% aa similar to ISCsa7.

References

1] ISfinder annotation (2010)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Tindall,B., Pomrenke,H.G., Schneider,S., Klenk,H.-P. and Eisen,J.A. (2010) Direct submission GenBank.