ISActu1

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AGWQ01000008.1 ND Actinomyces turicensis
Actinomyces turicensis ACS-279-V-Col4
DNA section
IS Length : 1440 bp

Ends


IR Length : 21/28

IRL : GAGGGTGTCGGAAGTTTTGTGTATGAGGTTTAATCCTCAATCACGAAGGA
IRR : GAGGGTGTCAGTCCGTTTGTGTACGGGGACTGATTTACAAGTATGCGGCG

Insertion site


Left flankDirect repeatRight flankDR Length
CTGATCGTCACACACTCCAAACTCTGGA8

DNA sequence

GAGGGTGTCGGAAGTTTTGTGTATGAGGTTTAATCCTCAATCACGAAGGAGAGTGCGCAACAATGACTGTTGTGTCCCCGAAGAAACATGGTGGCGCTGA
GCGCGTCGCCGATATCAGCCGCCGGCTGATGGAGAACCCGGAAACTGCCAGGCTGATCCAGGAGCTGGGTGAATCAACCGTCGACGCCAACGAGCTGGTG
CGTGGCTTGTTGCAGGCCACGATTAACAGTGGGCTCAACGCGGAAATGGATGCACACCTGGGCTACGTCAATGGCGACCGGGCTGGTAAGGAAGCGGCCG
GCCAAGCCAACAGCCGTAACGGCTCCTATCCTAAAACCGTGGACTCGGCATACGGGCCAGTTGATATCAGTGTCCCTCGAGATCGAGCAGGCACTTATAT
GCCGCGCATGGTCCCCAAGGGTAGCCGCAGACTTACCGACCTCGATGACATGATCATTAGTTTGTATGCGGGCGGAATGACCGTGCGTGACATCGAACAT
CATCTGGCTACCACCATCGGCGTGAACTTGTCGCCAGATACCATTAGCGCGGTCACCGATGCGGTCTTAGAGGAAGTCACCGCGTGGCAGACCAGGCAAC
TCGAGGCGTTCTATCCAGTTATCTTCCTTGATGCCCTACGTGTAAAAATCCGTGACAACGGACGCGTCGTCAACAAGGCGGTCTACATGGGTGTCGGAGT
GGACATGGAGGGCATTAAGCACATCTTGGGCTTGTGGGTAGCTACCAATGAAGGTGCAGCATTCTGGTCGCAGGTGTGCGCAGAAATCGCCAACCGCGGT
GTCAACGATGTCTTTATTGTCTGCTGTGACGGACTGAAAGGCTTTCCGGAAGCAATCCAGGCAACCTGGCCGGACTCCATGGTCCAAACCTGCGTGGTGC
ATCTGATTCGTGCCGCTAACAGGTGGGTAGCCTACGGCGACCGGAAAGAGGTCTCGAAGCATCTACGAGGCATCTATACCGCTGTCAACGAGGATGAAGC
TCGAAGTGCACTCGATGAGTTTGAGGCCAGCGAGCTTGGCCAGAAGTATCCGCAATCAGTGAAAGTCTGGCGCGACGCGTGGGACAGGTTCATTCCGTTC
CTGCAGTTCCCGCCAGCGGCAAGGAAGGTTATCTACACCACGAATTCCATCGAATCGATGAACAGTGAGCTGCGGAAAGCAACACGAAACCGCGTTCAGT
TCCCGTCGGATTCAGCGGCAGTGAAGACGCTGTGGCTGATGATCTGTAACATCGAGGACCGTCGTGCTGCCCGCCGCGCTAAAGAAGGTGCCAAGGCTTC
TGCTTCAGCCAAGCGACTTATCGAAGGCAGCAAGACCAGCAACTGGAAACAGGCAATCAATCAGCTATCCGTGGCCTACCCCGACAGGTTCGCCGCATAC
TTGTAAATCAGTCCCCGTACACAAACGGACTGACACCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1344 bp447 aa631406+No
ORF function : Transposase
Description :

ORF sequence :

MTVVSPKKHGGAERVADISRRLMENPETARLIQELGESTVDANELVRGLLQATINSGLNAEMDAHLGYVNGDRAGKEAAGQANSRNGSYPKTVDSAYGPV
DISVPRDRAGTYMPRMVPKGSRRLTDLDDMIISLYAGGMTVRDIEHHLATTIGVNLSPDTISAVTDAVLEEVTAWQTRQLEAFYPVIFLDALRVKIRDNG
RVVNKAVYMGVGVDMEGIKHILGLWVATNEGAAFWSQVCAEIANRGVNDVFIVCCDGLKGFPEAIQATWPDSMVQTCVVHLIRAANRWVAYGDRKEVSKH
LRGIYTAVNEDEARSALDEFEASELGQKYPQSVKVWRDAWDRFIPFLQFPPAARKVIYTTNSIESMNSELRKATRNRVQFPSDSAAVKTLWLMICNIEDR
RAARRAKEGAKASASAKRLIEGSKTSNWKQAINQLSVAYPDRFAAYL

 

Blast result :
Comments
ISActu1 is 85% aa similar to IS1132.
References