ISAba40

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Acinetobacter baumannii
Acinetobacter baumannii
Acinetobacter baumannii PR07
DNA section
IS Length : 1039 bp

Ends


IR Length : 16

IRL : GGCTTTGTTGCACAAACCTACCGATAAAGCCTTATTCCGTAATATAATTC
IRR : GGCTTTGTTGCACAAAGGCTTGAAAGATAGAGCTCCCCTAGAAGATCCAA

Insertion site


Left flankDirect repeatRight flankDR Length
ATCAATTGATGGTAAAAACGGCTTTGTTG9
caacaaagccggtaaaaactatcaacaag9

DNA sequence

GGCTTTGTTGCACAAACCTACCGATAAAGCCTTATTCCGTAATATAATTCGCAAATGAATAAGCCTACACCTAAAATTTATCGTACAAGCAATTGGTCAT
TCTACAATCGTGCTCTGATAAATCGAGGAAATCTCTCAATTTGGTTTGATCCAAAAACTCAATGGTATGCTCAACCCAAAGGCAAACATGGACGAAATCA
AACTTATTCTGACACAGCGATTCAATGCTGTCTGATGATCAAATCCCTATTTCGATTGTCTTTACGTATGGTCACTGGCTTTGTTCAAAGTCTCATTCAT
CTCTGCAGATTAGATTGGACAGCCCCAGATTATTCCACTCTCTGTAGAAGACAAAAGTATCTTGATATTGCAATTAACTATCAAAAAAACAGTAATGGTC
TCCACCTACTCGTCGATTCTACTGGTTTAAAGTTTCTGGGTGAAGGTGAATGGAAACGAAAGAAACATCAGCCTGAATATCGCCGCCAATGGCGTAAATT
ACATATTGGTATAGATGCTGAAACCCTTCAAATACGGGCAGTTCAGCTCAGCACTAACAATGTGAGTGATTCGCAGGTACTTGGTGATTTACTTGATCAG
ATTCCACAAGATGAGCAGATTGACTCCGTATATACTGATGGGGCTTATGACACAAAACAATGCCGTCAAGTAATTTCGGATCGGCAAGCACATGCAGTGA
TTCCACCTAGGAAAAATGCAAAGCCTTGGAAAGATACAAAGATTTGCTCGTTAGAGCGAAATGAGCTGCTTCGAACAGTTAAGCATTTAGGAAGAACCAT
TTGGAAAAAATGGTCAGGTTATCACCGGCGAAGTTTGGTTGAAACTAAGATGCATTGCATCAAATTATTAGGGGATAAACTCAGTGCGAGAAACTTTCAA
AGCCAAGTCAATGAAATACATACACGTGTGGCAATCTTAAATAAGTTTACGGAATTAGGCCGACCTCAAACCCGAGTTGTAACTTAAATTTGGATCTTCT
AGGGGAGCTCTATCTTTCAAGCCTTTGTGCAACAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
933 bp310 aa55987+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNKPTPKIYRTSNWSFYNRALINRGNLSIWFDPKTQWYAQPKGKHGRNQTYSDTAIQCCLMIKSLFRLSLRMVTGFVQSLIHLCRLDWTAPDYSTLCRRQ
KYLDIAINYQKNSNGLHLLVDSTGLKFLGEGEWKRKKHQPEYRRQWRKLHIGIDAETLQIRAVQLSTNNVSDSQVLGDLLDQIPQDEQIDSVYTDGAYDT
KQCRQVISDRQAHAVIPPRKNAKPWKDTKICSLERNELLRTVKHLGRTIWKKWSGYHRRSLVETKMHCIKLLGDKLSARNFQSQVNEIHTRVAILNKFTE
LGRPQTRVVT

 

Blast result :
Comments
ISAba40 is 96% aa similar to ISAha1.
Additionnal GenBank accession number : CP012035.
References
1] Uthaibhorn Singkham-in (2016) Direct submission.
2] Izwan,M., Kek,T.L. and Salleh,M.Z. (2015) Direct submission GenBank.