ISAbe13

  • Family IS5
  • Group IS427
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LKDJ01000012 ND Acinetobacter bereziniae
Acinetobacter bereziniae HPC229
DNA section
IS Length : 857 bp

Ends


IR Length : 13/16

IRL : GGGCGTGTTGACACTTTTAGATTAAAAAATAGCGAAGTAGTAAAATTAAA
IRR : GGGTCTGTTGACATTTAGGGTTCATAATTTAACCTACAAGGGGAGCCATA

Insertion site


Left flankDirect repeatRight flankDR Length
TATCATATTATAATTTTTTA0

DNA sequence

GGGCGTGTTGACACTTTTAGATTAAAAAATAGCGAAGTAGTAAAATTAAATCGCCAAACCCAATTCTACTATTCGCTATGCCTCGTACCATGTTAACAGA
TCAACACTGGCAAAAGTTGAAAGCTATTTTGCGTAATTTATCCATTCATCTCAACTCAAATTTAAGAAATTTTATTGAAGCGATTCTTTATAGGATTAGA
ACTGGGTGCCCTTGGCGTGATATCCCCACTTGCTTTGGACAACCGAACTCTATTTTTAAACGTTTTAATCGCTGGTCAAGTAGTGGTAAGTTACTCACTA
TATTCAAATTATTATCGCTGAATACAGATATGGAATGGCTGTTCATCGATGGTTCTCATATTTGCGCTCATCAACATTCAGCGGGTATCGCTGATCAGGC
AATCTCTAAAAGTGCTGGAGGAAACTCCTCCAAAATACATTTAGTAGTAGATTCAAATGGGAATCCTATTGATTTCATTATTACTGATGGAACCACACAT
GATGTTAAAGTCGCACCTGATTTAATTTCAAAACTCGATTTAAATGAGGCAGAGATTGTATGTGCAGATAAAGGCTACGATTCAGAGCCATTAAGACAGC
AGATTAGAGCAACTGGAACAAAAGCAAATATACCTAAAAAAACCAATAGCCAATCAAACAATGACCATATGGATTGGTATTTATATAAAATCAGGCACTT
AGTAGAAAATATGTTTTGTAGGTTAAAGCAATTTAGAGGGATAGCCACTCGATACGACAAGTTAAAACGGAACTATGAAAGTTCTGTTGCATTAGCTTGT
ATATTTTTATGGCTCCCCTTGTAGGTTAAATTATGAACCCTAAATGTCAACAGACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
747 bp248 aa78824+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPRTMLTDQHWQKLKAILRNLSIHLNSNLRNFIEAILYRIRTGCPWRDIPTCFGQPNSIFKRFNRWSSSGKLLTIFKLLSLNTDMEWLFIDGSHICAHQH
SAGIADQAISKSAGGNSSKIHLVVDSNGNPIDFIITDGTTHDVKVAPDLISKLDLNEAEIVCADKGYDSEPLRQQIRATGTKANIPKKTNSQSNNDHMDW
YLYKIRHLVENMFCRLKQFRGIATRYDKLKRNYESSVALACIFLWLPL

 

Blast result :
Comments
ISAbe13 is 94% aa similar to ISAba31.
References
1] Brovedan M.A. (2018) Direct submission.
2] Brovedan,M., Marchiaro,P.M., Moran-Barrio,J., Revale,S., Cameranesi,M., Brambilla,L., Viale,A.M. and Limansky,A.S. (2016) Genome Announc 4 (2).