Difference between revisions of "IS Families/ISL3 family"

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===Original Identification===
 
===Original Identification===
The founding member ISLr2 was identified in Lactobacillus delbrueckii subsp. Bulgaricus<ref><nowiki><pubmed>7565604</pubmed></nowiki></ref> a bacterium used mainly for production of yogurt in mixed-strain thermophilic culture together with Streptococcus thermophilus where is was responsible for the loss of the capacity to ferment lactose. It was noted to be similar to IS1165 from Leuconostoc mesenteroides subsp. cremoris strain DB1165 also used in commercial mesophilic starter cultures<ref><nowiki><pubmed>1325060</pubmed></nowiki></ref>.
+
'''<big>T</big>'''he founding member [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=ISLr2 IS''Lr2''] was identified in [[wikipedia:Lactobacillus_delbrueckii_subsp._bulgaricus|''Lactobacillus delbrueckii'' subsp. ''Bulgaricus'']]<ref><pubmed>7565604</pubmed></ref> a bacterium used mainly for production of yogurt in mixed-strain thermophilic culture together with [[wikipedia:Streptococcus_thermophilus|''Streptococcus thermophilu''s]] where is being responsible for the loss of the capacity to ferment lactose. It was noted to be similar to [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=IS1165 IS''1165''] from [[wikipedia:Leuconostoc_mesenteroides|''Leuconostoc mesenteroides'' subsp. ''cremoris'']] strain DB1165 also used in commercial mesophyllic starter cultures<ref><pubmed>1325060</pubmed></ref>.
  
 
===Distribution===
 
===Distribution===
There are more than 150 members from nearly 80 bacterial species. The family also includes archaeal members, particularly in the Methanomicrobia.  
+
There are more than 150 members from nearly 80 bacterial species. The family also includes archaeal members, particularly in the [[wikipedia:Methanomicrobia|Methanomicrobia]].  
  
Potential tIS derivatives with passenger genes appear quite common. These include a mercury resistance operon<ref><nowiki><pubmed>15907536</pubmed></nowiki></ref> in Tnmer1 (AY351675) from a conjugative plasmid, pPPM1000, in Enterococcus faecium and in ISStma11 from Stenotrophomonas maltophilia (NC_010943). A number of other tIS derivatives with additional types of passenger gene such as restriction modification systems in Acinetobacter bereziniae (ISAbe14; LKDJ01000006), Seratia marcesens (ISSm1; ) Klebsiella pneumoniae (ISKpn25; NC_009650) have also been identified. There are several additional examples of this type of structure: ISPpu12 (Pseudomonas putida; AY128707); ISPst2 (Pseudomonas stutzeri ; AJ012352); ISEc53 (Escherichia coli; HG941718); ISRso21 (Ralstonia solanacearam; ).
+
Potential tIS derivatives with passenger genes appear quite common. These include a [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3466566/ mercury resistance operon]<ref name=":0"><pubmed>15907536</pubmed>
  
IS1167 copies have been found flanking the cap1 (capsular polysaccharide) locus of type 1 S. pneumoniae forming a potential compound transposon<ref><nowiki><pubmed>11902728</pubmed></nowiki></ref>. It has also used as a tool to distinguish between S. pneumoniae strains<ref><nowiki><pubmed>9878026</pubmed></nowiki></ref> using IS1167 restriction fragment length polymorphism (RFLP) pattern analysis<ref><nowiki><pubmed>10747146</pubmed></nowiki></ref>. The Pseudomonas putida, IS1411, was discovered by its ability to insertional activaten promoterless pheBA genes by insertion due to an outward-directed promoter(s) at its left end<ref><nowiki><pubmed>9765560</pubmed></nowiki></ref>.
+
</ref> in Tnmer1 ([https://www.ncbi.nlm.nih.gov/nuccore/AY351675.1/ AY351675]) from a conjugative plasmid, pPPM1000, in ''[[wikipedia:Enterococcus_faecium|Enterococcus faecium]]'' and in [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=ISStma11 IS''Stma11''] from ''[[wikipedia:Stenotrophomonas_maltophilia|Stenotrophomonas maltophilia]]'' ([https://www.ncbi.nlm.nih.gov/nuccore/NC_010943 NC_010943]). A number of other '''tIS''' derivatives with additional types of passenger gene such as restriction modification systems in ''[[wikipedia:Acinetobacter_bereziniae|Acinetobacter bereziniae]]'' ([https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=ISAbe14 IS''Abe14'']; [https://www.ncbi.nlm.nih.gov/nuccore/LKDJ00000000.2 LKDJ01000006]), ''[[wikipedia:Serratia_marcescens|Seratia marcesens]]'' ([https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=ISSm1 IS''Sm1'']) ''[[wikipedia:Klebsiella_pneumoniae|Klebsiella pneumoniae]]'' ([https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=ISKpn25 IS''Kpn25'']; [https://www.ncbi.nlm.nih.gov/nuccore/NC_009650.1/ NC_009650]) have also been identified. There are several additional examples of this type of structure: [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=ISPpu12 IS''Ppu12''] (''[[wikipedia:Pseudomonas_putida|Pseudomonas putida]]''; [https://www.ncbi.nlm.nih.gov/nuccore/AY128707 AY128707]); [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=ISPst2 IS''Pst2''] (''[[wikipedia:Pseudomonas_stutzeri|Pseudomonas stutzeri]]'' ; [https://www.ncbi.nlm.nih.gov/nuccore/AJ012352 AJ012352]); [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=ISEc53 IS''Ec53''] (''[[wikipedia:Escherichia_coli|Escherichia coli]]''; [https://www.ncbi.nlm.nih.gov/nuccore/HG941718 HG941718]); [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=ISRso21 IS''Rso21''] (''[[wikipedia:Ralstonia_solanacearum|Ralstonia solanacearam]]'').
  
Small sequences (130-340 bp) related to the IS1167 IRs have been detected in Streptococcus sanguis, S. pneumoniae, and S. agalactiae<ref><nowiki><pubmed></pubmed></nowiki></ref><ref><nowiki><pubmed>2352474</pubmed></nowiki></ref><ref><nowiki><pubmed>7597107</pubmed></nowiki></ref>.
+
[https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=IS1167 IS''1167''] copies have been found flanking the ''cap1'' (capsular polysaccharide) locus of type 1 ''[[wikipedia:Streptococcus_pneumoniae|S. pneumoniae]]'' forming a potential compound transposon<ref><pubmed>11902728</pubmed></ref>. It has also used as a tool to distinguish between ''[[wikipedia:Streptococcus_pneumoniae|S. pneumoniae]]'' strains<ref><pubmed>9878026</pubmed></ref> using [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=IS1167 IS''1167''] [[wikipedia:Restriction_fragment_length_polymorphism|'''R'''estriction '''F'''ragment '''L'''ength '''P'''olymorphism (RFLP)]] pattern analysis<ref><pubmed>10747146</pubmed></ref>. The ''[[wikipedia:Pseudomonas_putida|Pseudomonas putida]]'', [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=IS1411 IS''1411''], was discovered by its ability to insertional activate promoter less ''pheBA'' genes by insertion due to an outward-directed promoter(s) at its left end<ref name=":1"><pubmed>9765560</pubmed>
 +
 
 +
</ref>.
 +
 
 +
Small sequences (130-340 bp) related to the [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=IS1167 IS''1167''] '''IRs''' have been detected in ''[[wikipedia:Streptococcus_sanguinis|Streptococcus sanguis]]'', ''[[wikipedia:Streptococcus_pneumoniae|S. pneumoniae]]'', and ''[[wikipedia:Streptococcus_agalactiae|S. agalactiae]]''<ref><pubmed>2352474</pubmed></ref><ref><pubmed>7597107</pubmed></ref>.
  
 
===Organization===
 
===Organization===
Members range in size from 1186 bp to 1553 bp, carry closely related IR of between 15 and 39 bp (Fig. ISL3.1) and generate DR of 8 bp. They generally have a single orf of between 400 and 440 amino acids which shows good alignment and includes an -helical insertion domain<ref><nowiki><pubmed>20067338</pubmed></nowiki></ref>.
+
Members range in size from 1186 bp to 1553 bp, carry closely related IR of between 15 and 39 bp [[:File:Fig. ISL3.1.png|(Fig.IS''L3'')]] and generate DR of 8 bp. They generally have a single orf of between 400 and 440 amino acids which shows good alignment and includes an α-helical insertion domain<ref><pubmed>20067338</pubmed></ref>.  
[[Image:Fig. ISL3.1.png|thumb|center|850px|Fig. ISL3.1]]
+
[[Image:Fig. ISL3.1.png|thumb|center|620x620px|'''Fig. IS''L3''.''' '''General IS''L3'' characteristics, average length, and common ends. Top:''' Distribution of IS length (base pairs) of IS''L3'' family members. The number of examples used in the sample is shown above each column. '''Bottom''': Left ('''IRL''') and right '''IRR''' inverted terminal repeats are shown in [http://weblogo.threeplusone.com/ WebLogo] format.|alt=]]
 +
 
 +
While most carry only a single orf, the transposase, several variants include additional orfs: [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=IS1096 IS''1096''] harbors two orfs: the upstream orf exhibits similarities to the IS''L3'' family Tpases; the second, ''tnpR'', a [https://www.ncbi.nlm.nih.gov/pubmed/12829265 MerR-like transcription factor], is related to orfs from ''[[wikipedia:Rhizobium_rhizogenes|Agrobacterium rhizogenes]]'' and ''[[wikipedia:Rhizobium|Rhizobium]]'' sp. plasmids. TnpR appears to regulate transposition activity of [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=ISPpu12 IS''Ppu12'']<ref name=":2"><pubmed>20061472</pubmed>
  
While most carry only a single orf, the transposase, several variants include additional orfs: IS1096 harbors two orfs: the upstream orf exhibits similarities to the ISL3 family Tpases; the second, tnpR, a MerR-like transcription factor, is related to orfs from Agrobacterium rhizogenes and Rhizobium sp. plasmids. TnpR appears to regulate transposition activity of ISPpu12<ref><nowiki><pubmed>20061472</pubmed></nowiki></ref>; ISPpu12 in addition to a tnpA homologue carries three open reading frames, a PnbR-like regulatory protein of the MerR family, a putative membrane/transport protein and a putative lipoprotein signal peptide-like protein (lspA)<ref><nowiki><pubmed>12426346</pubmed></nowiki></ref><ref><nowiki><pubmed>12426347</pubmed></nowiki></ref>.
+
</ref>; [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=ISPpu12 IS''Ppu12''] in addition to a ''tnpA'' homologue carries three open reading frames, a PnbR-like regulatory protein of the [https://www.uniprot.org/uniprot/P0A183 MerR family], a putative membrane/transport protein and a putative [https://www.uniprot.org/uniprot/P00804 lipoprotein signal peptide-like protein (''lspA'')]<ref><pubmed>12426346</pubmed></ref><ref><pubmed>12426347</pubmed></ref>.
  
In IS1167, the reading frame appears to be distributed between two consecutive orfs with a potential for translational coupling suggested by overlapping initiation and termination codons (ATGA).  
+
In [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=IS1167 IS''1167''], the reading frame appears to be distributed between two consecutive orfs with a potential for translational coupling suggested by overlapping initiation and termination codons (ATGA).  
  
 
===Mechanism===
 
===Mechanism===
Transposition of most of these elements has been demonstrated, but no detailed analysis of their transposition mechanism has yet appeared. IS1411 from Pseudomonas putida forms a circular species with<ref><nowiki><pubmed>9765560</pubmed></nowiki></ref>. Clearly as is the case in other IS which form circular transposition intermediates, expression of the tnp gene will be driven by the leftward oriented promoter. Transposon circles are also formed by ISPst9<ref><nowiki><pubmed>18645960</pubmed></nowiki></ref> and the tIS, Tnmer1<ref><nowiki><pubmed>15907536</pubmed></nowiki></ref> and in both cases the abutted IRs are also separated by 5 bp. An isoform of ISPpu12<ref><nowiki><pubmed>20061472</pubmed></nowiki></ref>, IS31831 and IS1411<ref><nowiki><pubmed>9765560</pubmed></nowiki></ref> forms DNA species with a size expected for an excised transposon circles. For IS31831, derivatives of which have been used in mutagenesis, the majority of insertions were found to be simple and only rare clones carried accompanying vector DNA<ref><nowiki><pubmed>8196545</pubmed></nowiki></ref>.
+
Transposition of most of these elements has been demonstrated, but no detailed analysis of their transposition mechanism has yet appeared. [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=IS1411 IS''1411''] from ''[[wikipedia:Pseudomonas_putida|Pseudomonas putida]]'' forms a circular species with abutted IS ends separated by 5 bp from the DNA flank of one IS end <ref name=":1" />. Clearly, as is the case in other IS which form circular transposition intermediates, expression of the ''tnp'' gene will be driven by the leftward oriented promoter. Transposon circles are also formed by [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=ISPst9 IS''Pst9'']<ref><pubmed>18645960</pubmed></ref> and the tIS, Tn''mer1'' <ref name=":0" /> and in both cases the abutted '''IRs''' are also separated by 5 bp. An isoform of [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=ISPpu12 IS''Ppu12'']''<ref name=":2" />'', [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=IS31831 IS''31831''] and [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=IS1411 IS''1411'']''<ref name=":1" />'' forms DNA species with a size expected for an excised transposon circles. For [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=IS31831 IS''31831''], derivatives of which have been used in [[wikipedia:Mutagenesis|mutagenesis]], the majority of insertions were found to be simple and only rare clones carried accompanying vector DNA<ref><pubmed>8196545</pubmed></ref>.
 
 
There is some evidence indicating that transposition of these IS can be induced by a form of zygotic induction following conjugative transfer<ref><nowiki><pubmed>20061472</pubmed></nowiki></ref> although the phenomenon is not understood. ISPst9 undergoes transposition in the resident Pseudomonas stutzeri strain when brought into contact with a conjugative E. coli strain, E. coli S17-1lambda(pir), and undergoes deletion. Activation requires a second ISL3 derivative, ISPpu12, in the same strain. Although both ISL3-like ISs are similar, they differ in their accompanying genes: Mutation of TnpR, a MerR-like transcriptional regulator present in ISPpu12 but not in ISPst9, reduced the ISPpu12 tnpA transcription and decreased formation of transposon circle transposition intermediates after conjugative interaction. Complementation of TnpR restored the ability to activate transposition but expression of TnpR in the absence of ISPpu12 did not result in conjugative induction of ISPst9. This suggests that ISPpu12 TnpR activates ISPpu12 tnpA transcription and raises the possibility that ISPpu12 TnpA might bind IRs of both ISPpu12 and ISPst9 and catalyze transposition of both elements.  
 
  
No obvious target sequence specificity has yet been observed although there is some suggestion that there may be a preference for AT-rich regions.
+
There is some evidence indicating that transposition of these IS can be induced by a form of zygotic induction following conjugative transfer ''<ref name=":2" />'' although the phenomenon is not understood. [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=ISPst9 IS''Pst9''] undergoes transposition in the resident ''[[wikipedia:Pseudomonas_stutzeri|Pseudomonas stutzeri]]'' strain when brought into contact with a conjugative ''[[wikipedia:Escherichia_coli|E. coli]]'' strain, ''[[wikipedia:Escherichia_coli|E. coli]]'' S17-1 lambda(pir), and undergoes deletion. Activation requires a second IS''L3'' derivative, [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=ISPpu12 IS''Ppu12''], in the same strain. 
<br/>
 
  
 +
Although both IS''L3''-like ISs are similar, they differ in their accompanying genes: Mutation of TnpR, a [https://www.uniprot.org/uniprot/P0A183 MerR-like] transcriptional regulator present in [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=ISPpu12 IS''Ppu12''] but not in [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=ISPst9 IS''Pst9''], reduced the [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=ISPpu12 IS''Ppu12''] ''tnpA'' transcription and decreased formation of transposon circle transposition intermediates after conjugative interaction. Complementation of TnpR restored the ability to activate transposition but the expression of TnpR in the absence of [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=ISPpu12 IS''Ppu12''] did not result in conjugative induction of [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=ISPst9 IS''Pst9'']. This suggests that [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=ISPpu12 IS''Ppu12''] TnpR activates [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=ISPpu12 IS''Ppu12''] ''tnpA'' transcription and raises the possibility that [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=ISPpu12 IS''Ppu12''] TnpA might bind '''IRs''' of both [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=ISPpu12 IS''Ppu12''] and [https://tncentral.ncc.unesp.br/ISfinder/scripts/ficheIS.php?name=ISPst9 IS''Pst9''] and catalyze transposition of both elements.
  
<b>Bibliography</b>
+
No obvious target sequence specificity has yet been observed, although there is some suggestion that there may be a preference for AT-rich regions.
<references/>
+
<br />
<br/>
+
==Bibliography==
<br/>
+
<references />

Latest revision as of 23:59, 12 August 2021

Original Identification

The founding member ISLr2 was identified in Lactobacillus delbrueckii subsp. Bulgaricus[1] a bacterium used mainly for production of yogurt in mixed-strain thermophilic culture together with Streptococcus thermophilus where is being responsible for the loss of the capacity to ferment lactose. It was noted to be similar to IS1165 from Leuconostoc mesenteroides subsp. cremoris strain DB1165 also used in commercial mesophyllic starter cultures[2].

Distribution

There are more than 150 members from nearly 80 bacterial species. The family also includes archaeal members, particularly in the Methanomicrobia.

Potential tIS derivatives with passenger genes appear quite common. These include a mercury resistance operon[3] in Tnmer1 (AY351675) from a conjugative plasmid, pPPM1000, in Enterococcus faecium and in ISStma11 from Stenotrophomonas maltophilia (NC_010943). A number of other tIS derivatives with additional types of passenger gene such as restriction modification systems in Acinetobacter bereziniae (ISAbe14; LKDJ01000006), Seratia marcesens (ISSm1) Klebsiella pneumoniae (ISKpn25; NC_009650) have also been identified. There are several additional examples of this type of structure: ISPpu12 (Pseudomonas putida; AY128707); ISPst2 (Pseudomonas stutzeri ; AJ012352); ISEc53 (Escherichia coli; HG941718); ISRso21 (Ralstonia solanacearam).

IS1167 copies have been found flanking the cap1 (capsular polysaccharide) locus of type 1 S. pneumoniae forming a potential compound transposon[4]. It has also used as a tool to distinguish between S. pneumoniae strains[5] using IS1167 Restriction Fragment Length Polymorphism (RFLP) pattern analysis[6]. The Pseudomonas putida, IS1411, was discovered by its ability to insertional activate promoter less pheBA genes by insertion due to an outward-directed promoter(s) at its left end[7].

Small sequences (130-340 bp) related to the IS1167 IRs have been detected in Streptococcus sanguis, S. pneumoniae, and S. agalactiae[8][9].

Organization

Members range in size from 1186 bp to 1553 bp, carry closely related IR of between 15 and 39 bp (Fig.ISL3) and generate DR of 8 bp. They generally have a single orf of between 400 and 440 amino acids which shows good alignment and includes an α-helical insertion domain[10].

Fig. ISL3. General ISL3 characteristics, average length, and common ends. Top: Distribution of IS length (base pairs) of ISL3 family members. The number of examples used in the sample is shown above each column. Bottom: Left (IRL) and right IRR inverted terminal repeats are shown in WebLogo format.

While most carry only a single orf, the transposase, several variants include additional orfs: IS1096 harbors two orfs: the upstream orf exhibits similarities to the ISL3 family Tpases; the second, tnpR, a MerR-like transcription factor, is related to orfs from Agrobacterium rhizogenes and Rhizobium sp. plasmids. TnpR appears to regulate transposition activity of ISPpu12[11]; ISPpu12 in addition to a tnpA homologue carries three open reading frames, a PnbR-like regulatory protein of the MerR family, a putative membrane/transport protein and a putative lipoprotein signal peptide-like protein (lspA)[12][13].

In IS1167, the reading frame appears to be distributed between two consecutive orfs with a potential for translational coupling suggested by overlapping initiation and termination codons (ATGA).

Mechanism

Transposition of most of these elements has been demonstrated, but no detailed analysis of their transposition mechanism has yet appeared. IS1411 from Pseudomonas putida forms a circular species with abutted IS ends separated by 5 bp from the DNA flank of one IS end [7]. Clearly, as is the case in other IS which form circular transposition intermediates, expression of the tnp gene will be driven by the leftward oriented promoter. Transposon circles are also formed by ISPst9[14] and the tIS, Tnmer1 [3] and in both cases the abutted IRs are also separated by 5 bp. An isoform of ISPpu12[11], IS31831 and IS1411[7] forms DNA species with a size expected for an excised transposon circles. For IS31831, derivatives of which have been used in mutagenesis, the majority of insertions were found to be simple and only rare clones carried accompanying vector DNA[15].

There is some evidence indicating that transposition of these IS can be induced by a form of zygotic induction following conjugative transfer [11] although the phenomenon is not understood. ISPst9 undergoes transposition in the resident Pseudomonas stutzeri strain when brought into contact with a conjugative E. coli strain, E. coli S17-1 lambda(pir), and undergoes deletion. Activation requires a second ISL3 derivative, ISPpu12, in the same strain.

Although both ISL3-like ISs are similar, they differ in their accompanying genes: Mutation of TnpR, a MerR-like transcriptional regulator present in ISPpu12 but not in ISPst9, reduced the ISPpu12 tnpA transcription and decreased formation of transposon circle transposition intermediates after conjugative interaction. Complementation of TnpR restored the ability to activate transposition but the expression of TnpR in the absence of ISPpu12 did not result in conjugative induction of ISPst9. This suggests that ISPpu12 TnpR activates ISPpu12 tnpA transcription and raises the possibility that ISPpu12 TnpA might bind IRs of both ISPpu12 and ISPst9 and catalyze transposition of both elements.

No obvious target sequence specificity has yet been observed, although there is some suggestion that there may be a preference for AT-rich regions.

Bibliography

  1. Germond JE, Lapierre L, Delley M, Mollet B . A new mobile genetic element in Lactobacillus delbrueckii subsp. bulgaricus. - Mol Gen Genet: 1995 Aug 30, 248(4);407-16 [PubMed:7565604] [DOI]
  2. Johansen E, Kibenich A . Isolation and characterization of IS1165, an insertion sequence of Leuconostoc mesenteroides subsp. cremoris and other lactic acid bacteria. - Plasmid: 1992 May, 27(3);200-6 [PubMed:1325060] [DOI]
  3. 3.0 3.1 Davis IJ, Roberts AP, Ready D, Richards H, Wilson M, Mullany P . Linkage of a novel mercury resistance operon with streptomycin resistance on a conjugative plasmid in Enterococcus faecium. - Plasmid: 2005 Jul, 54(1);26-38 [PubMed:15907536] [DOI]
  4. Muñoz R, Mollerach M, López R, García E . Molecular organization of the genes required for the synthesis of type 1 capsular polysaccharide of Streptococcus pneumoniae: formation of binary encapsulated pneumococci and identification of cryptic dTDP-rhamnose biosynthesis genes. - Mol Microbiol: 1997 Jul, 25(1);79-92 [PubMed:11902728] [DOI]
  5. Robinson DA, Turner JS, Facklam RR, Parkinson AJ, Breiman RF, Gratten M, Steinhoff MC, Hollingshead SK, Briles DE, Crain MJ . Molecular characterization of a globally distributed lineage of serotype 12F Streptococcus pneumoniae causing invasive disease. - J Infect Dis: 1999 Feb, 179(2);414-22 [PubMed:9878026] [DOI]
  6. Luna VA, Jernigan DB, Tice A, Kellner JD, Roberts MC . A novel multiresistant Streptococcus pneumoniae serogroup 19 clone from Washington State identified by pulsed-field gel electrophoresis and restriction fragment length patterns. - J Clin Microbiol: 2000 Apr, 38(4);1575-80 [PubMed:10747146]
  7. 7.0 7.1 7.2 Kallastu A, Hõrak R, Kivisaar M . Identification and characterization of IS1411, a new insertion sequence which causes transcriptional activation of the phenol degradation genes in Pseudomonas putida. - J Bacteriol: 1998 Oct, 180(20);5306-12 [PubMed:9765560]
  8. Alloing G, Trombe MC, Claverys JP . The ami locus of the gram-positive bacterium Streptococcus pneumoniae is similar to binding protein-dependent transport operons of gram-negative bacteria. - Mol Microbiol: 1990 Apr, 4(4);633-44 [PubMed:2352474] [DOI]
  9. Zhou L, Hui FM, Morrison DA . Characterization of IS1167, a new insertion sequence in Streptococcus pneumoniae. - Plasmid: 1995 Mar, 33(2);127-38 [PubMed:7597107] [DOI]
  10. Hickman AB, Chandler M, Dyda F . Integrating prokaryotes and eukaryotes: DNA transposases in light of structure. - Crit Rev Biochem Mol Biol: 2010 Feb, 45(1);50-69 [PubMed:20067338] [DOI]
  11. 11.0 11.1 11.2 Christie-Oleza JA, Nogales B, Lalucat J, Bosch R . TnpR encoded by an ISPpu12 isoform regulates transposition of two different ISL3-like insertion sequences in Pseudomonas stutzeri after conjugative interaction. - J Bacteriol: 2010 Mar, 192(5);1423-32 [PubMed:20061472] [DOI]
  12. Williams PA, Jones RM, Shaw LE . A third transposable element, ISPpu12, from the toluene-xylene catabolic plasmid pWW0 of Pseudomonas putida mt-2. - J Bacteriol: 2002 Dec, 184(23);6572-80 [PubMed:12426346] [DOI]
  13. Weightman AJ, Topping AW, Hill KE, Lee LL, Sakai K, Slater JH, Thomas AW . Transposition of DEH, a broad-host-range transposon flanked by ISPpu12, in Pseudomonas putida is associated with genomic rearrangements and dehalogenase gene silencing. - J Bacteriol: 2002 Dec, 184(23);6581-91 [PubMed:12426347] [DOI]
  14. Christie-Oleza JA, Nogales B, Martín-Cardona C, Lanfranconi MP, Albertí S, Lalucat J, Bosch R . ISPst9, an ISL3-like insertion sequence from Pseudomonas stutzeri AN10 involved in catabolic gene inactivation. - Int Microbiol: 2008 Jun, 11(2);101-10 [PubMed:18645960]
  15. Vertès AA, Inui M, Kobayashi M, Kurusu Y, Yukawa H . Isolation and characterization of IS31831, a transposable element from Corynebacterium glutamicum. - Mol Microbiol: 1994 Feb, 11(4);739-46 [PubMed:8196545] [DOI]